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The Enterprise Manager is the "heart" of Database Workbench. In order to work with Database Workbench, you first need to register a server in the Enterprise Manager. After registering, you will find many tools and options in context sensitive menus of the server.
To work with a database/schema, you have to connect to it (establish a session) - this will open the Database Navigator - your source for working with database objects, viewing dependencies and much more.
Here are the steps to take:
After completing these steps, you know how to work with Database Workbench! :-)